教學大綱
| 教科書 | No textbooks are required in this course. |
| 教科書ISBN | 0000000000 |
| 參考書 | Bayesian Evolutionary Analysis with BEAST; Publisher: Cambridge University Press; 1st edition (6 August 2015); ISBN-10: 1107019656; ISBN-13 : 978-1107019652 |
| 課程講義網址 | E-Learning |
| 整體教學目標 | Genomic data science is an interdisciplinary subject that applies data science and biostatistics to the field of genomics. This course is designed for students in virology or molecular biology related fields. It allows students to understand, analyze and interpret viral genome data in order to have skills of bioinformatic analysis and interdisciplinary Learning. |
| 教學方法 | Lecture slides will be prepared for students and uploaded to CGU’s E-Learning platform. Classes will be conducted in computer laboratory. Consider this is a graduate-level course, literature covering up-to-date research activities in this field will be shared and discussed with students. Final presentation will be conducted for assessing students' comprehension on these subjects. Quiz and homework will be distributed too. |
| 課程簡介 | 課程內容將包含兩大主題，包含次世代基因定序資料分析，與病毒基因序列與親緣關係學分析。 |
| 彈性學習 | Group discussion of scientific papers (2024-12-24 and 2024-12-31) Ext: #3040; Email: yngong@mail.cgu.edu.tw |
| 成績考核 | 1. Project presentation (40%) 2. Project proposal (20%) 3. Quizzes and homework (20%) 4. Class participation (20%) |
| 師生互動時間 | Friday 13:00-15:00; Ext: #3040; Email: yngong@mail.cgu.edu.tw |
教學進度
| 項次 | 教學主題 |
|---|---|
|
1 |
Class introduction Lecturer: Yu-Nong Gong 龔于農 |
| 2 | Sequence database Lecturer: Yu-Nong Gong 龔于農 |
| 3 | Holiday |
| 4 | Multiple sequence alignment |
| 5 | Molecular evolution and phylogeny Lecturer: Yu-Nong Gong 龔于農 |
| 6 | Bayesian phylogenetic analysis Lecturer: Yu-Nong Gong 龔于農 |
| 7 | Phylodynamics and viral recombination Lecturer: Yu-Nong Gong 龔于農 |
| 8 | Project proposal Lecturer: Yu-Nong Gong 龔于農 |
| 9 | DNA technology and evolution of the Central Dogma (Dr. Lecturer: Kuo-Ming Lee 李國銘 |
| 10 | cDNA library preparation and next-/third-generation sequencing platform Lecturer: Kuo-Ming Lee 李國銘 |
| 11 | Linux basics Lecturer: Yu-Nong Gong 龔于農 |
| 12 | Linux shell script Lecturer: Yu-Nong Gong 龔于農 |
| 13 | Next-generation sequencing: Data preprocessing Lecturer: Yu-Nong Gong 龔于農 |
| 14 | Next-generation sequencing: RNA-Seq analysis Lecturer: Yu-Nong Gong 龔于農 |
| 15 | Next-generation sequencing: Genome assembly Lecturer: Yu-Nong Gong 龔于農 |
| 16 | Project presentation Lecturer: Yu-Nong Gong 龔于農 |
先修課程
| 本課程沒有先修課程規定 |
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